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Study of Viruses (Virology)*



*Part 1

The study of viruses is called virology. This branch of microbiology is related to the structure of viruses, their classification (taxonomy), artificial methods of cultivation, isolation processes, various assays, genetics, infections caused by viruses in animals, humans, and plants, modes of infection, evolution, vaccines, and therapy.


*Virus*

Viruses are unique in nature; they are the smallest self-replicating organisms, so small that they cannot be seen with a regular compound microscope. At a very basic level, a virus consists of a small segment of nucleic acid surrounded by a protein shell. They do not have the capability of metabolism but attack cells and parasitize the cell's biosynthetic machinery to meet their needs.

Nucleic acid is either DNA or RNA, known as the virus genome. Based on this, viruses are classified into seven families. This classification was introduced by American biologist David Baltimore and is known as the Baltimore classification. Here is a brief overview:



1. Viruses with double-stranded DNA (dsDNA), where two strands are complementary to each other.

2. Viruses with single-stranded DNA (ssDNA).

3. Viruses with double-stranded RNA (dsRNA), where two strands are complementary.

4. Viruses with a single strand of positive-sense RNA (+ssRNA), which can be directly translated into proteins.

5. Viruses with a single strand of negative-sense RNA (-ssRNA), which first needs to form a complementary strand for translation.

6. Viruses with single-stranded RNA that undergo reverse transcription to form DNA (ssRNA-RT).

7. Viruses with double-stranded DNA, where one strand has a gap, leading to partial dsDNA. This gap is filled during replication to form complete strands, which then produce RNA strands and ultimately the DNA genome (dsDNA-RT).


Step by step, we will discuss the structure of viruses, replication, invasion of cells, entry/penetration into cells, how our immune system protects us from viruses, and a detailed look at the mentioned families.


*For The Students Of Allied Health Sciences (FSc Group) 👇👇👇*


*Third Part (3)*


*Study of Viruses (Virology)*

In the last part, we talked about the experiments and observations that led to the discovery of viruses. Today, we will talk about the structure of viruses and what components they have.


*Structure*

All viruses have nucleic acid (which can be either DNA or RNA, but not both in the same virus). The nucleic acid carries genetic information unique to each virus. This means each virus has different information. The form of a virus that infects a host cell from outside (extracellular) is called a virion. The genetic information produces different types of proteins; some build the structure of the virus and others are functional. Structural proteins form a shell called a capsid that surrounds the nucleic acid. Some viruses also have proteins inside the capsid that act as enzymes, helping in the replication of the *virus.*


*Here, I think it's important to discuss some terms to differentiate viruses from similar entities.*


*Viroids* are disease-causing organisms that have only nucleic acid without any structural proteins.


Some virus-like particles are called prions, which are primarily proteins with a small nucleic acid molecule entangled with the protein molecule.


The real reason viruses can cause infection is because of their nucleic acid. In many viruses (though not all), if the capsid is separated from the nucleic acid, the virus can still infect the host cell but not as effectively as the whole virion.


The capsid serves three functions:

1. Protects the virus's nucleic acid from enzymes (nucleases) that can break it down.

2. Provides a surface that recognizes and attaches to specific molecules (receptors) on the host cell.

3. Provides a place for proteins that facilitate the virus's entry into the host cell or, in some cases, inject the virus's nucleic acid into the host cell.


The combination of nucleic acid and various proteins forms the nucleoprotein or nucleocapsid. Some viruses have multiple layers of proteins surrounding the nucleic acid. Some also have a membrane made of lipids and proteins (lipoprotein), taken from the host cell's membrane, known as an envelope.


The amount and arrangement of proteins and nucleic acid determine the size and shape of the virus. Viruses mainly have two shapes:

1. Rods or filaments, where proteins and nucleic acid are arranged linearly.

2. Spherical, which are primarily icosahedral in shape.


Some large and complex viruses, like bacteriophages, have both filamentous and icosahedral features, forming a combination of shapes.


The genome of double-stranded DNA viruses consists of one large molecule, while in double-stranded RNA viruses, it consists of small segments, each representing a gene (discussed in detail in the first part).


In the next part, tomorrow we will discuss how viruses attack host cells.


*Note-:* Below are the first two images related to the structure of viruses, and the third image shows the shapes of viruses.

*Source Of diagrams -: Encyclopedia Britannica.*


*Study of viruses (Virology)*

 *Part 4-: Part*

 in the last episode we discussed the structure of the virus, today we will briefly comment on the method of entry of the virus into the host cell. 
 Entry of the virus into the host cell
 *(Entry of the virus into the host cell)*
 
 Well, viruses are grouped according to different things they have like genetic material, membranes, shape etc.  
(I will write a separate article on this topic,) 
.  So we said that viruses are also classified according to their members, so there are two types of viruses. 

 The genetic material of a virus is surrounded by a layer of lipids called the envelope, and viruses that have this outer layer are called enveloped viruses.  Is .
 Viruses that do not have this envelope are called *non-enveloped* viruses 
  Depending on these types, the methods of entry of the virus into the host cell are also slightly different, but the basic steps are the same. 

 Viruses with an outer layer have certain types of molecules on their surface called *glycoproteins* or *spikes*, their receptors (they are made of carbohydrates or lipids or proteins) mean molecules that have  Together, these spikes connect, after connecting, either the virus inserts its genetic material into the cytoplasm of the cell, or it inserts its capsid.  Sometimes, after attaching to the cell membrane, the virus is *endocytosed*, a process in which the cell swallows up anything.
 If these spikes are removed from the surface of the virus, the virus cannot attack the cell, and even if these receptors are blocked, the virus cannot infect the cell. This is not being done for all viruses, but for a few.  One is talking about having spikes.  Different viruses also have different ways of infecting cells 
 Viruses that do not have an outer envelope have specific molecules attached to their capsids, these molecules bind to the plasma membrane of the host cell and are also endocytosed. 

 After entering the host cell, the infection cycle of the virus begins, which includes the ability of the virus to reproduce, the ability to take the host cell hostage.

 In short, there are generally three ways for the virus to enter the cell
 1- Attachment of virus to cell membranes 
 2 - Endocytosis 
 3- Encapsulation of the capsid of the virus.
 Check out the pictures below 
 The first picture shows how the virus enters the host cell membrane by fusion, while the second picture shows endocytosis.


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